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genomoncology/biomcp

MITAPI key required

🐍 ☁️ - Biomedical research MCP server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.

RustSearch

Install

npx -y genomoncology-biomcp

Required environment variables

S2_API_KEYSet in your MCP config
NCBI_API_KEYSet in your MCP config
OPENFDA_API_KEYSet in your MCP config
NCI_API_KEYSet in your MCP config
ONCOKB_TOKENSet in your MCP config
ALPHAGENOME_API_KEYSet in your MCP config
DISGENET_API_KEYSet in your MCP config

claude_desktop_config.json

claude_desktop_config.json
{
  "mcpServers": {
    "genomoncology-biomcp": {
      "command": "npx",
      "args": [
        "-y",
        "genomoncology-biomcp"
      ],
      "env": {
        "S2_API_KEY": "<YOUR_S2_API_KEY>",
        "NCBI_API_KEY": "<YOUR_NCBI_API_KEY>",
        "OPENFDA_API_KEY": "<YOUR_OPENFDA_API_KEY>",
        "NCI_API_KEY": "<YOUR_NCI_API_KEY>",
        "ONCOKB_TOKEN": "<YOUR_ONCOKB_TOKEN>",
        "ALPHAGENOME_API_KEY": "<YOUR_ALPHAGENOME_API_KEY>",
        "DISGENET_API_KEY": "<YOUR_DISGENET_API_KEY>"
      }
    }
  }
}

Add this to your Claude Desktop config file. Find it at ~/Library/Application Support/Claude/claude_desktop_config.json on macOS.