🐍 ☁️ - Biomedical research MCP server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.
To add genomoncology/biomcp to Claude, run the install command below or copy the ready-made config for Claude Code, Claude Desktop, Cursor and VS Code further down. Restart your client after adding it and its tools show up in your next conversation. It needs 7 environment variables, listed below.
Install
npx -y genomoncology-biomcpEnvironment variables
S2_API_KEYSet in your MCP configNCBI_API_KEYSet in your MCP configOPENFDA_API_KEYSet in your MCP configNCI_API_KEYSet in your MCP configONCOKB_TOKENSet in your MCP configALPHAGENOME_API_KEYSet in your MCP configDISGENET_API_KEYSet in your MCP configInstall with your client
claude mcp add genomoncology-biomcp --env S2_API_KEY=<YOUR_S2_API_KEY> --env NCBI_API_KEY=<YOUR_NCBI_API_KEY> --env OPENFDA_API_KEY=<YOUR_OPENFDA_API_KEY> --env NCI_API_KEY=<YOUR_NCI_API_KEY> --env ONCOKB_TOKEN=<YOUR_ONCOKB_TOKEN> --env ALPHAGENOME_API_KEY=<YOUR_ALPHAGENOME_API_KEY> --env DISGENET_API_KEY=<YOUR_DISGENET_API_KEY> -- npx -y genomoncology-biomcp
Run this in a terminal to add the server to Claude Code.
What this does
genomoncology/biomcp exposes a set of tools to Claude over the Model Context Protocol. After you add it to claude_desktop_config.json (snippet above) and restart Claude Desktop, those tools become callable inside any conversation.
Requirements
This server needs the following environment variables to be set before it can run:
S2_API_KEY NCBI_API_KEY OPENFDA_API_KEY NCI_API_KEY ONCOKB_TOKEN ALPHAGENOME_API_KEY DISGENET_API_KEY
Set these via the env object in your MCP config (see claude_desktop_config.json snippet above).
Frequently asked questions
How do I install genomoncology/biomcp?
Run the Claude Code command in the install section to add genomoncology/biomcp to Claude Code, or copy the ready-made config for your client from the install section on this page. Restart your client afterwards and the tools appear in your next conversation.
Which clients work with genomoncology/biomcp?
This page carries setup and config for Claude Code, Claude Desktop, Cursor and VS Code. Any other MCP client that accepts a standard server config can connect to genomoncology/biomcp as well.
Does genomoncology/biomcp need an API key?
Yes. Before it can run, set these environment variables: S2_API_KEY, NCBI_API_KEY, OPENFDA_API_KEY, NCI_API_KEY, ONCOKB_TOKEN, ALPHAGENOME_API_KEY, DISGENET_API_KEY. They go in the env block of your MCP config.
What license is genomoncology/biomcp under?
genomoncology/biomcp is listed under the MIT license.
Imported from the Official MCP Registry. The details above come from the registry entry; the maker can claim this listing to correct them, add docs, and see its traffic.
Is this your MCP server?
Claim this listing to see its traffic, fix details yourself, and skip the review queue on future updates.
Add this badge to your README
Show visitors this server is listed in the ClaudeRules directory. The badge links straight to this listing.
[](https://clauderules.net/mcp/genomoncology-biomcp)<a href="https://clauderules.net/mcp/genomoncology-biomcp" target="_blank" rel="noopener noreferrer"><img src="https://clauderules.net/api/badge/genomoncology-biomcp" alt="Listed on clauderules.net" /></a>More Rust MCP servers
Serena MCP: the IDE for your agent
A powerful toolkit for coding, providing semantic retrieval and editing capabilities.
mediar-ai/screenpipe
🎖️ 🦀 🏠 🍎 Local-first system capturing screen/audio with timestamped indexing, SQL/embedding storage, semantic search, LLM-powered history analysis, and event-triggered actions - enables building c
Inbox Zero
Search Gmail and Outlook, save drafts, manage email rules, and view email stats.
lharries/whatsapp-mcp
🐍 🏎️ - An MCP server for searching your personal WhatsApp messages, contacts and sending messages to individuals or groups