genomoncology/biomcp
MITAPI key required🐍 ☁️ - Biomedical research MCP server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.
Install
npx -y genomoncology-biomcpRequired environment variables
S2_API_KEYSet in your MCP configNCBI_API_KEYSet in your MCP configOPENFDA_API_KEYSet in your MCP configNCI_API_KEYSet in your MCP configONCOKB_TOKENSet in your MCP configALPHAGENOME_API_KEYSet in your MCP configDISGENET_API_KEYSet in your MCP configclaude_desktop_config.json
{
"mcpServers": {
"genomoncology-biomcp": {
"command": "npx",
"args": [
"-y",
"genomoncology-biomcp"
],
"env": {
"S2_API_KEY": "<YOUR_S2_API_KEY>",
"NCBI_API_KEY": "<YOUR_NCBI_API_KEY>",
"OPENFDA_API_KEY": "<YOUR_OPENFDA_API_KEY>",
"NCI_API_KEY": "<YOUR_NCI_API_KEY>",
"ONCOKB_TOKEN": "<YOUR_ONCOKB_TOKEN>",
"ALPHAGENOME_API_KEY": "<YOUR_ALPHAGENOME_API_KEY>",
"DISGENET_API_KEY": "<YOUR_DISGENET_API_KEY>"
}
}
}
}Add this to your Claude Desktop config file. Find it at ~/Library/Application Support/Claude/claude_desktop_config.json on macOS.
What this does
genomoncology/biomcp exposes a set of tools to Claude over the Model Context Protocol. After you add it to claude_desktop_config.json (snippet above) and restart Claude Desktop, those tools become callable inside any conversation. That makes it useful when you want Claude to reach into search engines and knowledge bases without copy-pasting context every turn.
Requirements
This server needs the following environment variables to be set before it can run:
S2_API_KEY NCBI_API_KEY OPENFDA_API_KEY NCI_API_KEY ONCOKB_TOKEN ALPHAGENOME_API_KEY DISGENET_API_KEY
Set these via the env object in your MCP config (see claude_desktop_config.json snippet above).
Common use cases
- •Search the open web, internal docs, or a vector store from inside a Claude session
- •Bring fresh information past Claude's training cutoff into context
- •Run multi-source research without copy-pasting URLs and snippets
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