Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
To add chembl-mcp-server to Claude, run the install command below or copy the ready-made config for Claude Code, Claude Desktop, Cursor and VS Code further down. Restart your client after adding it and its tools show up in your next conversation. It declares 10 environment variables, listed below.
Install
npx -y @cyanheads/chembl-mcp-server@0.5.0Environment variables
CANVAS_PROVIDER_TYPESet in your MCP configCHEMBL_API_BASE_URLSet in your MCP configCHEMBL_REQUEST_TIMEOUT_MSSet in your MCP configCHEMBL_MAX_PAGE_SIZESet in your MCP configCHEMBL_DEFAULT_LIMITSet in your MCP configCHEMBL_MAX_SPILL_ROWSSet in your MCP configCHEMBL_MAX_CONCURRENT_PAGESSet in your MCP configCHEMBL_SPILL_DEADLINE_MSSet in your MCP configCHEMBL_DATAFRAME_DROP_ENABLEDSet in your MCP configMCP_LOG_LEVELSet in your MCP configSet only if the maker requires them; this listing does not flag any of them as required.
Install with your client
claude mcp add chembl --env CANVAS_PROVIDER_TYPE=<YOUR_CANVAS_PROVIDER_TYPE> --env CHEMBL_API_BASE_URL=<YOUR_CHEMBL_API_BASE_URL> --env CHEMBL_REQUEST_TIMEOUT_MS=<YOUR_CHEMBL_REQUEST_TIMEOUT_MS> --env CHEMBL_MAX_PAGE_SIZE=<YOUR_CHEMBL_MAX_PAGE_SIZE> --env CHEMBL_DEFAULT_LIMIT=<YOUR_CHEMBL_DEFAULT_LIMIT> --env CHEMBL_MAX_SPILL_ROWS=<YOUR_CHEMBL_MAX_SPILL_ROWS> --env CHEMBL_MAX_CONCURRENT_PAGES=<YOUR_CHEMBL_MAX_CONCURRENT_PAGES> --env CHEMBL_SPILL_DEADLINE_MS=<YOUR_CHEMBL_SPILL_DEADLINE_MS> --env CHEMBL_DATAFRAME_DROP_ENABLED=<YOUR_CHEMBL_DATAFRAME_DROP_ENABLED> --env MCP_LOG_LEVEL=<YOUR_MCP_LOG_LEVEL> -- npx -y @cyanheads/chembl-mcp-server@0.5.0
Run this in a terminal to add the server to Claude Code.
What this does
chembl-mcp-server exposes a set of tools to Claude over the Model Context Protocol. After you add it to claude_desktop_config.json (snippet above) and restart Claude Desktop, those tools become callable inside any conversation.
Requirements
This server declares the following environment variables. Set only the ones the maker requires for your setup; this listing does not flag any of them as required:
CANVAS_PROVIDER_TYPE CHEMBL_API_BASE_URL CHEMBL_REQUEST_TIMEOUT_MS CHEMBL_MAX_PAGE_SIZE CHEMBL_DEFAULT_LIMIT CHEMBL_MAX_SPILL_ROWS CHEMBL_MAX_CONCURRENT_PAGES CHEMBL_SPILL_DEADLINE_MS CHEMBL_DATAFRAME_DROP_ENABLED MCP_LOG_LEVEL
Set these via the env object in your MCP config (see claude_desktop_config.json snippet above).
Frequently asked questions
How do I install chembl-mcp-server?
Run the Claude Code command in the install section to add chembl-mcp-server to Claude Code, or copy the ready-made config for your client from the install section on this page. Restart your client afterwards and the tools appear in your next conversation.
Which clients work with chembl-mcp-server?
This page carries setup and config for Claude Code, Claude Desktop, Cursor and VS Code. Any other MCP client that accepts a standard server config can connect to chembl-mcp-server as well.
Does chembl-mcp-server need an API key?
This listing does not flag an API key as required. The server can use these environment variables: CANVAS_PROVIDER_TYPE, CHEMBL_API_BASE_URL, CHEMBL_REQUEST_TIMEOUT_MS, CHEMBL_MAX_PAGE_SIZE, CHEMBL_DEFAULT_LIMIT, CHEMBL_MAX_SPILL_ROWS, CHEMBL_MAX_CONCURRENT_PAGES, CHEMBL_SPILL_DEADLINE_MS, CHEMBL_DATAFRAME_DROP_ENABLED, MCP_LOG_LEVEL; the maker's docs say which of them your setup needs. They go in the env block of your MCP config.
Imported from the Official MCP Registry. The details above come from the registry entry; the maker can claim this listing to correct them, add docs, and see its traffic.
Is this your MCP server?
Claim this listing to see its traffic, fix details yourself, and skip the review queue on future updates.
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