Phylogenetic inference via IQ-TREE 3 — never returns a topology without its support
To add phylokit-mcp to Claude, run the install command below or copy the ready-made config for Claude Code, Claude Desktop, Cursor and VS Code further down. Restart your client after adding it and its tools show up in your next conversation. It declares 2 environment variables, listed below.
Install
uvx phylokit-mcp@0.8.0Environment variables
OMP_NUM_THREADSSet in your MCP configMKL_NUM_THREADSSet in your MCP configSet only if the maker requires them; this listing does not flag any of them as required.
Install with your client
claude mcp add phylokit --env OMP_NUM_THREADS=<YOUR_OMP_NUM_THREADS> --env MKL_NUM_THREADS=<YOUR_MKL_NUM_THREADS> -- uvx phylokit-mcp@0.8.0
Run this in a terminal to add the server to Claude Code.
What this does
phylokit-mcp exposes a set of tools to Claude over the Model Context Protocol. After you add it to claude_desktop_config.json (snippet above) and restart Claude Desktop, those tools become callable inside any conversation.
Requirements
This server declares the following environment variables. Set only the ones the maker requires for your setup; this listing does not flag any of them as required:
OMP_NUM_THREADS MKL_NUM_THREADS
Set these via the env object in your MCP config (see claude_desktop_config.json snippet above).
Frequently asked questions
How do I install phylokit-mcp?
Run the Claude Code command in the install section to add phylokit-mcp to Claude Code, or copy the ready-made config for your client from the install section on this page. Restart your client afterwards and the tools appear in your next conversation.
Which clients work with phylokit-mcp?
This page carries setup and config for Claude Code, Claude Desktop, Cursor and VS Code. Any other MCP client that accepts a standard server config can connect to phylokit-mcp as well.
Does phylokit-mcp need an API key?
This listing does not flag an API key as required. The server can use these environment variables: OMP_NUM_THREADS, MKL_NUM_THREADS; the maker's docs say which of them your setup needs. They go in the env block of your MCP config.
Imported from the Official MCP Registry. The details above come from the registry entry; the maker can claim this listing to correct them, add docs, and see its traffic.
Is this your MCP server?
Claim this listing to see its traffic, fix details yourself, and skip the review queue on future updates.
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