Image annotation, incl. histopathology: nuclei, outlines, QC → QuPath/COCO/YOLO. No GPU.
To add Histopathology Annotation MCP to Claude, run the install command below or copy the ready-made config for Claude Code, Claude Desktop, Cursor and VS Code further down. Restart your client after adding it and its tools show up in your next conversation. It needs 3 environment variables, listed below.
Install
uvx label-image-mcp@0.8.1Environment variables
LABEL_USERNAMESet in your MCP configLABEL_PASSWORDSet in your MCP configLABEL_API_URLSet in your MCP configInstall with your client
claude mcp add histopathology-annotation --env LABEL_USERNAME=<YOUR_LABEL_USERNAME> --env LABEL_PASSWORD=<YOUR_LABEL_PASSWORD> --env LABEL_API_URL=<YOUR_LABEL_API_URL> -- uvx label-image-mcp@0.8.1
Run this in a terminal to add the server to Claude Code.
What this does
Histopathology Annotation MCP exposes a set of tools to Claude over the Model Context Protocol. After you add it to claude_desktop_config.json (snippet above) and restart Claude Desktop, those tools become callable inside any conversation.
Requirements
This server needs the following environment variables to be set before it can run:
LABEL_USERNAME LABEL_PASSWORD LABEL_API_URL
Set these via the env object in your MCP config (see claude_desktop_config.json snippet above).
Frequently asked questions
How do I install Histopathology Annotation MCP?
Run the Claude Code command in the install section to add Histopathology Annotation MCP to Claude Code, or copy the ready-made config for your client from the install section on this page. Restart your client afterwards and the tools appear in your next conversation.
Which clients work with Histopathology Annotation MCP?
This page carries setup and config for Claude Code, Claude Desktop, Cursor and VS Code. Any other MCP client that accepts a standard server config can connect to Histopathology Annotation MCP as well.
Does Histopathology Annotation MCP need an API key?
Yes. Before it can run, set these environment variables: LABEL_USERNAME, LABEL_PASSWORD, LABEL_API_URL. They go in the env block of your MCP config.
Imported from the Official MCP Registry. The details above come from the registry entry; the maker can claim this listing to correct them, add docs, and see its traffic.
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